Exploration of plant genomes in the FLAGdb environment

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Exploration of plant genomes in the FLAGdb ++ environment

29-03-2011  Results. The FLAGdb ++ information system was developed with the aim of using whole plant genomes as physical references in order to gather and merge available genomic data from in silico or experimental approaches. Available through a JAVA application, original interfaces and tools assist the functional study of plant genes by considering them in their specific context: chromosome, gene ...

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Exploration of plant genomes in the FLAGdb++ environment.

29-03-2011  Exploration of plant genomes in the FLAGdb++ environment. ... FLAGdb++ presents a powerful complementary tool for exploring plant genomes and exploiting structural and functional resources, without the need for computer programming knowledge. First launched in 2002, ...

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Exploration of plant genomes in the FLAGdb++ environment ...

29-03-2011  Exploration of plant genomes in the FLAGdb ++ environment. Sandra Dèrozier 1,2, Franck Samson 1,2, Jean-Philippe Tamby 1, Cécile Guichard 1, Véronique Brunaud 1, Philippe Grevet 1, Séverine Gagnot 1,3, Philippe Label 4, Jean-Charles Leplé 4, Alain Lecharny 1 Sébastien Aubourg 1

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(PDF) Exploration of plant genomes in the FLAGdb++ environment

Exploration of plant genomes in the FLAGdb++ environment.pdf. Content uploaded by Franck Samson. Author content. ... Exploration of plant genomes in the FLAGdb ++ environment.

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DATABASE Open Access Exploration of plant genomes in the ...

DATABASE Open Access Exploration of plant genomes in the FLAGdb++ environment Sandra Dèrozier1,2†, Franck Samson1,2†, Jean-Philippe Tamby1, Cécile Guichard1, Véronique Brunaud1, Philippe Grevet1, Séverine Gagnot1,3, Philippe Label4, Jean-Charles Leplé4, Alain Lecharny1 and Sébastien Aubourg1* Abstract Background: In the contexts of genomics, post-genomics and systems

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Exploration of plant genomes in the FLAGdb++ environment

Exploration of plant genomes in the FLAGdb++ environment. Plant Methods, 2011. Sébastien Aubourg. Alain Lecharny. Download PDF. Download Full PDF Package. This paper. A short summary of this paper. 37 Full PDFs related to this paper.

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Exploration of plant genomes in the FLAGdb++ environment ...

FLAGdb++ is mainly dedicated to the exploration of large gene groups in order to decipher functional connections, to highlight shared or specific structural or functional features, and to facilitate translational tasks between plant species (Arabidopsis thaliana, Oryza sativa, Populus trichocarpa and Vitis vinifera).

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Exploration of plant genomes in the FLAGdb++ environment

Exploration of plant genomes in the FLAGdb++ environment. Plant Methods, 2011. Sébastien Aubourg. Alain Lecharny. Download PDF. Download Full PDF Package. This paper. A short summary of this paper. 37 Full PDFs related to this paper.

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Exploration of plant genomes in the FLAGdb++ environment

FLAGdb++ is mainly dedicated to the exploration of large gene groups in order to decipher functional connections, to highlight shared or specific structural or functional features, and to facilitate translational tasks between plant species (Arabidopsis thaliana, Oryza sativa, Populus trichocarpa and Vitis vinifera).ConclusionCombining original data with the output of experts and graphical ...

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Exploration of plant genomes in the FLAGdb++ environment ...

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Exploration of plant genomes in the FLAGdb ++ environment.

Background: In the contexts of genomics, post-genomics and systems biology approaches, data integration presents a major concern. Databases provide crucial solutions: they store, organize and allow information to be queried, they enhance the visibility of newly produced data by comparing them with previously published results, and facilitate the exploration and development of both existing...

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Exploration of plant genomes in the FLAGdb ++ environment ...

Exploration of plant genomes in the FLAGdb++ environment Leplé Jean-Charles, Label Philippe, Gagnot Séverine, Grevet Philippe, Brunaud Véronique, Guichard Cécile, Tamby Jean-Philippe, Samson Franck, Dèrozier Sandra, Lecharny Alain, Aubourg Sébastien; Affiliations ...

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Exploration of plant genomes in the FLAGdb++ environment

01-01-2011  Exploration of plant genomes in the FLAGdb++ environment Exploration of plant genomes in the FLAGdb++ environment. Access Restriction Open. Author: Sandra, Dèrozier ♦ Samson, Franck ♦ Jean-philippe, Tamby ♦ Guichard, Cécile ♦ Brunaud, Véronique ♦ Philippe, Grevet ♦ Gagnot, Séverine ♦ Philippe, ...

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Exploration of plant genomes in the FLAGdb++ environment

Background : In the contexts of genomics, post-genomics and systems biology approaches, data integration presents a major concern. Databases provide crucial solutions: they store, organize and allow information to be queried, they enhance the visibility of newly produced data by comparing them with previously published results, and facilitate the exploration and development of both existing ...

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Exploration of plant genomes in the FLAGdb++ environment

Exploration of plant genomes in the FLAGdb++ environment Abstract Background In the contexts of genomics, post-genomics and systems biology approaches, data integration presents a major concern. Databases provide crucial solutions: they store, organize and allow information to be queried, they enhance the visibility of newly produced data by comparing the...

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Exploration of plant genomes in the FLAGdb++ environment ...

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Exploration of plant genomes in the FLAGdb++ environment ...

A locked padlock) or https:// means you’ve safely connected to the .gov website. Share sensitive information only on official, secure websites.

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Exploration of plant genomes in the FLAGdb++ environment

01-01-2011  Exploration of plant genomes in the FLAGdb++ environment Exploration of plant genomes in the FLAGdb++ environment. Access Restriction Open. Author: Sandra, Dèrozier ♦ Samson, Franck ♦ Jean-philippe, Tamby ♦ Guichard, Cécile ♦ Brunaud, Véronique ♦ Philippe, Grevet ♦ Gagnot, Séverine ♦ Philippe, ...

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Exploration of plant genomes in the FLAGdb++ environment

Background : In the contexts of genomics, post-genomics and systems biology approaches, data integration presents a major concern. Databases provide crucial solutions: they store, organize and allow information to be queried, they enhance the visibility of newly produced data by comparing them with previously published results, and facilitate the exploration and development of both existing ...

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Exploration of plant genomes in the FLAGdb++environment

(2011) Dèrozier et al. Plant Methods. Background: In the contexts of genomics, post-genomics and systems biology approaches, data integration presents a major concern. Databases provide crucial solutions: they store, organize and allow information to be queried, they enhance the visibility of new...

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Exploration of plant genomes in the FLAGdb++ environment

Exploration of plant genomes in the FLAGdb++ environment Abstract Background In the contexts of genomics, post-genomics and systems biology approaches, data integration presents a major concern. Databases provide crucial solutions: they store, organize and allow information to be queried, they enhance the visibility of newly produced data by comparing the...

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FLAGdb ++ : A Bioinformatic Environment to Study and ...

Abstract. Today, the growing knowledge and data accumulation on plant genomes do not solve in a simple way the task of gene function inference. Because data of different types are coming from various sources, we need to integrate and analyze them to help biologists in this task.

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FLAGdb++: A Bioinformatic Environment to Study and Compare ...

Since data are numerous and complex, we focused on accessibility and visualization with an original and user-friendly interface. In this chapter we present the main tools of FLAGdb++ and a use-case to explore a gene family: structural and functional properties of this family and research of orthologous genes in the other plant genomes.

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Plant Genomes in a Changing Environment

Plant Genomes in a Changing Environment 24-26 October 2018 Wellcome Genome Campus, Hinxton, Cambridge, UK Conference Programme Wednesday, 24 October 2018 12:30-13:50 Registration with Lunch 13:50-14:00 Welcome and Introductions Cristobal Uauy, John Innes Centre, UK 14:00-15:00 Keynote Lecture Chair: Cristobal Uauy

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Plant Genomes in a Changing Environment – Wellcome Genome ...

Plant Genomes in a Changing Environment. October 16th - 18th 2019. Wellcome Genome Campus, UK. Abstract submission open for posters only. Summary. Summary. The meeting will bring together plant scientists to discuss recent advances in the elucidation of gene function and networks.

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Plant 3D genomics: the exploration and application of ...

In plants, these technologies are gradually being adopted, and our understanding of the 3D structure of plant genomes is getting more detailed. The technologies used in plants are mainly 3C-based technologies, and all 3C-based technologies use proximal ligation, and so it is difficult to completely eliminate false positives of chromatin connections through current algorithms.

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